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2013


Reconstructing patient-specific cardiac models from contours via Delaunay triangulation and graph-cuts
Reconstructing patient-specific cardiac models from contours via Delaunay triangulation and graph-cuts

Min Wan, Calvin Lim, Junmei Zhang, Yi Su, Si Yong Yeo, Desheng Wang, Ru San Tan, Liang Zhong

In International Conference of the IEEE Engineering in Medicine and Biology Society, pages: 2976-9, 2013 (inproceedings)

[BibTex]

2013

[BibTex]


Regional comparison of left ventricle systolic wall stress reveals intraregional uniformity in healthy subjects
Regional comparison of left ventricle systolic wall stress reveals intraregional uniformity in healthy subjects

Soo Kng Teo, Si Yong Yeo, May Ling Tan, Chi Wan Lim, Liang Zhong, Ru San Tan, Yi Su

In Computing in Cardiology Conference, pages: 575 - 578, 2013 (inproceedings)

Abstract
This study aimed to assess the feasibility of using the regional uniformity of the left ventricle (LV) wall stress (WS) to diagnose patients with myocardial infarction. We present a novel method using a similarity map that measures the degree of uniformity in nominal systolic WS across pairs of segments within the same patient. The values of the nominal WS are computed at each vertex point from a 1-to-1 corresponding mesh pair of the LV at the end-diastole (ED) and end-systole (ES) phases. The 3D geometries of the LV at ED and ES are reconstructed from border-delineated MRI images and the 1-to-1 mesh generated using a strain-energy minimization approach. The LV is then partitioned into 16 segments based on published clinical standard and the nominal WS histogram distribution for each of the segment was computed. A similarity index is then computed for each pair of histogram distributions to generate a 16-by-16 similarity map. Based on our initial study involving 12 MI patients and 9 controls, we observed uniformity for intra- regional comparisons in the controls compared against the patients. Our results suggest that the regional uniformity of the nominal systolic WS in the form of a similarity map can potentially be used as a discriminant between MI patients and normal controls.

[BibTex]

[BibTex]


Class-Specific Hough Forests for Object Detection
Class-Specific Hough Forests for Object Detection

Gall, J., Lempitsky, V.

In Decision Forests for Computer Vision and Medical Image Analysis, pages: 143-157, 11, (Editors: Criminisi, A. and Shotton, J.), Springer, 2013 (incollection)

code Project Page [BibTex]

code Project Page [BibTex]


Image Gradient Based Level Set Methods in 2D and 3D
Image Gradient Based Level Set Methods in 2D and 3D

Xianhua Xie, Si Yong Yeo, Majid Mirmehdi, Igor Sazonov, Perumal Nithiarasu

In Deformation Models: Tracking, Animation and Applications, pages: 101-120, 0, (Editors: Manuel González Hidalgo and Arnau Mir Torres and Javier Varona Gómez), Springer, 2013 (inbook)

Abstract
This chapter presents an image gradient based approach to perform 2D and 3D deformable model segmentation using level set. The 2D method uses an external force field that is based on magnetostatics and hypothesized magnetic interactions between the active contour and object boundaries. The major contribution of the method is that the interaction of its forces can greatly improve the active contour in capturing complex geometries and dealing with difficult initializations, weak edges and broken boundaries. This method is then generalized to 3D by reformulating its external force based on geometrical interactions between the relative geometries of the deformable model and the object boundary characterized by image gradient. The evolution of the deformable model is solved using the level set method so that topological changes are handled automatically. The relative geometrical configurations between the deformable model and the object boundaries contribute to a dynamic vector force field that changes accordingly as the deformable model evolves. The geometrically induced dynamic interaction force has been shown to greatly improve the deformable model performance in acquiring complex geometries and highly concave boundaries, and it gives the deformable model a high invariancy in initialization configurations. The voxel interactions across the whole image domain provide a global view of the object boundary representation, giving the external force a long attraction range. The bidirectionality of the external force field allows the new deformable model to deal with arbitrary cross-boundary initializations, and facilitates the handling of weak edges and broken boundaries.

[BibTex]

[BibTex]


Non-parametric hand pose estimation with object context
Non-parametric hand pose estimation with object context

Romero, J., Kjellström, H., Ek, C. H., Kragic, D.

Image and Vision Computing , 31(8):555 - 564, 2013 (article)

Abstract
In the spirit of recent work on contextual recognition and estimation, we present a method for estimating the pose of human hands, employing information about the shape of the object in the hand. Despite the fact that most applications of human hand tracking involve grasping and manipulation of objects, the majority of methods in the literature assume a free hand, isolated from the surrounding environment. Occlusion of the hand from grasped objects does in fact often pose a severe challenge to the estimation of hand pose. In the presented method, object occlusion is not only compensated for, it contributes to the pose estimation in a contextual fashion; this without an explicit model of object shape. Our hand tracking method is non-parametric, performing a nearest neighbor search in a large database (.. entries) of hand poses with and without grasped objects. The system that operates in real time, is robust to self occlusions, object occlusions and segmentation errors, and provides full hand pose reconstruction from monocular video. Temporal consistency in hand pose is taken into account, without explicitly tracking the hand in the high-dim pose space. Experiments show the non-parametric method to outperform other state of the art regression methods, while operating at a significantly lower computational cost than comparable model-based hand tracking methods.

Publisher site pdf link (url) [BibTex]

Publisher site pdf link (url) [BibTex]

2003


Image statistics and anisotropic diffusion
Image statistics and anisotropic diffusion

Scharr, H., Black, M. J., Haussecker, H.

In Int. Conf. on Computer Vision, pages: 840-847, October 2003 (inproceedings)

pdf [BibTex]

2003

pdf [BibTex]


A switching {Kalman} filter model for the motor cortical coding of hand motion
A switching Kalman filter model for the motor cortical coding of hand motion

Wu, W., Black, M. J., Mumford, D., Gao, Y., Bienenstock, E., Donoghue, J. P.

In Proc. IEEE Engineering in Medicine and Biology Society, pages: 2083-2086, September 2003 (inproceedings)

pdf [BibTex]

pdf [BibTex]


Learning the statistics of people in images and video
Learning the statistics of people in images and video

Sidenbladh, H., Black, M. J.

International Journal of Computer Vision, 54(1-3):183-209, August 2003 (article)

Abstract
This paper address the problems of modeling the appearance of humans and distinguishing human appearance from the appearance of general scenes. We seek a model of appearance and motion that is generic in that it accounts for the ways in which people's appearance varies and, at the same time, is specific enough to be useful for tracking people in natural scenes. Given a 3D model of the person projected into an image we model the likelihood of observing various image cues conditioned on the predicted locations and orientations of the limbs. These cues are taken to be steered filter responses corresponding to edges, ridges, and motion-compensated temporal differences. Motivated by work on the statistics of natural scenes, the statistics of these filter responses for human limbs are learned from training images containing hand-labeled limb regions. Similarly, the statistics of the filter responses in general scenes are learned to define a “background” distribution. The likelihood of observing a scene given a predicted pose of a person is computed, for each limb, using the likelihood ratio between the learned foreground (person) and background distributions. Adopting a Bayesian formulation allows cues to be combined in a principled way. Furthermore, the use of learned distributions obviates the need for hand-tuned image noise models and thresholds. The paper provides a detailed analysis of the statistics of how people appear in scenes and provides a connection between work on natural image statistics and the Bayesian tracking of people.

pdf pdf from publisher code DOI [BibTex]

pdf pdf from publisher code DOI [BibTex]


A framework for robust subspace learning
A framework for robust subspace learning

De la Torre, F., Black, M. J.

International Journal of Computer Vision, 54(1-3):117-142, August 2003 (article)

Abstract
Many computer vision, signal processing and statistical problems can be posed as problems of learning low dimensional linear or multi-linear models. These models have been widely used for the representation of shape, appearance, motion, etc., in computer vision applications. Methods for learning linear models can be seen as a special case of subspace fitting. One draw-back of previous learning methods is that they are based on least squares estimation techniques and hence fail to account for “outliers” which are common in realistic training sets. We review previous approaches for making linear learning methods robust to outliers and present a new method that uses an intra-sample outlier process to account for pixel outliers. We develop the theory of Robust Subspace Learning (RSL) for linear models within a continuous optimization framework based on robust M-estimation. The framework applies to a variety of linear learning problems in computer vision including eigen-analysis and structure from motion. Several synthetic and natural examples are used to develop and illustrate the theory and applications of robust subspace learning in computer vision.

pdf code pdf from publisher Project Page [BibTex]

pdf code pdf from publisher Project Page [BibTex]


Guest editorial: Computational vision at {Brown}
Guest editorial: Computational vision at Brown

Black, M. J., Kimia, B.

International Journal of Computer Vision, 54(1-3):5-11, August 2003 (article)

pdf pdf from publisher [BibTex]

pdf pdf from publisher [BibTex]


Robust parameterized component analysis: Theory and applications to {2D} facial appearance models
Robust parameterized component analysis: Theory and applications to 2D facial appearance models

De la Torre, F., Black, M. J.

Computer Vision and Image Understanding, 91(1-2):53-71, July 2003 (article)

Abstract
Principal component analysis (PCA) has been successfully applied to construct linear models of shape, graylevel, and motion in images. In particular, PCA has been widely used to model the variation in the appearance of people's faces. We extend previous work on facial modeling for tracking faces in video sequences as they undergo significant changes due to facial expressions. Here we consider person-specific facial appearance models (PSFAM), which use modular PCA to model complex intra-person appearance changes. Such models require aligned visual training data; in previous work, this has involved a time consuming and error-prone hand alignment and cropping process. Instead, the main contribution of this paper is to introduce parameterized component analysis to learn a subspace that is invariant to affine (or higher order) geometric transformations. The automatic learning of a PSFAM given a training image sequence is posed as a continuous optimization problem and is solved with a mixture of stochastic and deterministic techniques achieving sub-pixel accuracy. We illustrate the use of the 2D PSFAM model with preliminary experiments relevant to applications including video-conferencing and avatar animation.

pdf [BibTex]

pdf [BibTex]


no image
A Gaussian mixture model for the motor cortical coding of hand motion

Wu, W., Mumford, D., Black, M. J., Gao, Y., Bienenstock, E., Donoghue, J. P.

Neural Control of Movement, Santa Barbara, CA, April 2003 (conference)

abstract [BibTex]

abstract [BibTex]


Connecting brains with machines: The neural control of {2D} cursor movement
Connecting brains with machines: The neural control of 2D cursor movement

Black, M. J., Bienenstock, E., Donoghue, J. P., Serruya, M., Wu, W., Gao, Y.

In 1st International IEEE/EMBS Conference on Neural Engineering, pages: 580-583, Capri, Italy, March 2003 (inproceedings)

pdf [BibTex]

pdf [BibTex]


A quantitative comparison of linear and non-linear models of motor cortical activity for the encoding and decoding of arm motions
A quantitative comparison of linear and non-linear models of motor cortical activity for the encoding and decoding of arm motions

Gao, Y., Black, M. J., Bienenstock, E., Wu, W., Donoghue, J. P.

In 1st International IEEE/EMBS Conference on Neural Engineering, pages: 189-192, Capri, Italy, March 2003 (inproceedings)

pdf [BibTex]

pdf [BibTex]


no image
Accuracy of manual spike sorting: Results for the Utah intracortical array

Wood, F., Fellows, M., Vargas-Irwin, C., Black, M. J., Donoghue, J. P.

Program No. 279.2. 2003, Abstract Viewer and Itinerary Planner, Society for Neuroscience, Washington, DC, 2003, Online (conference)

abstract [BibTex]

abstract [BibTex]


no image
Specular flow and the perception of surface reflectance

Roth, S., Domini, F., Black, M. J.

Journal of Vision, 3 (9): 413a, 2003 (conference)

abstract poster [BibTex]

abstract poster [BibTex]


Attractive people: Assembling loose-limbed models using non-parametric belief propagation
Attractive people: Assembling loose-limbed models using non-parametric belief propagation

Sigal, L., Isard, M. I., Sigelman, B. H., Black, M. J.

In Advances in Neural Information Processing Systems 16, NIPS, pages: 1539-1546, (Editors: S. Thrun and L. K. Saul and B. Schölkopf), MIT Press, 2003 (inproceedings)

Abstract
The detection and pose estimation of people in images and video is made challenging by the variability of human appearance, the complexity of natural scenes, and the high dimensionality of articulated body models. To cope with these problems we represent the 3D human body as a graphical model in which the relationships between the body parts are represented by conditional probability distributions. We formulate the pose estimation problem as one of probabilistic inference over a graphical model where the random variables correspond to the individual limb parameters (position and orientation). Because the limbs are described by 6-dimensional vectors encoding pose in 3-space, discretization is impractical and the random variables in our model must be continuous-valued. To approximate belief propagation in such a graph we exploit a recently introduced generalization of the particle filter. This framework facilitates the automatic initialization of the body-model from low level cues and is robust to occlusion of body parts and scene clutter.

pdf (color) pdf (black and white) [BibTex]

pdf (color) pdf (black and white) [BibTex]


Neural decoding of cursor motion using a {Kalman} filter
Neural decoding of cursor motion using a Kalman filter

(Nominated: Best student paper)

Wu, W., Black, M. J., Gao, Y., Bienenstock, E., Serruya, M., Shaikhouni, A., Donoghue, J. P.

In Advances in Neural Information Processing Systems 15, pages: 133-140, MIT Press, 2003 (inproceedings)

pdf [BibTex]

pdf [BibTex]

1999


Edges as outliers: Anisotropic smoothing using local image statistics
Edges as outliers: Anisotropic smoothing using local image statistics

Black, M. J., Sapiro, G.

In Scale-Space Theories in Computer Vision, Second Int. Conf., Scale-Space ’99, pages: 259-270, LNCS 1682, Springer, Corfu, Greece, September 1999 (inproceedings)

Abstract
Edges are viewed as statistical outliers with respect to local image gradient magnitudes. Within local image regions we compute a robust statistical measure of the gradient variation and use this in an anisotropic diffusion framework to determine a spatially varying "edge-stopping" parameter σ. We show how to determine this parameter for two edge-stopping functions described in the literature (Perona-Malik and the Tukey biweight). Smoothing of the image is related the local texture and in regions of low texture, small gradient values may be treated as edges whereas in regions of high texture, large gradient magnitudes are necessary before an edge is preserved. Intuitively these results have similarities with human perceptual phenomena such as masking and "popout". Results are shown on a variety of standard images.

pdf [BibTex]

1999

pdf [BibTex]


Probabilistic detection and tracking of motion discontinuities
Probabilistic detection and tracking of motion discontinuities

(Marr Prize, Honorable Mention)

Black, M. J., Fleet, D. J.

In Int. Conf. on Computer Vision, ICCV-99, pages: 551-558, ICCV, Corfu, Greece, September 1999 (inproceedings)

pdf [BibTex]

pdf [BibTex]


Artscience Sciencart
Artscience Sciencart

Black, M. J., Levy, D., PamelaZ,

In Art and Innovation: The Xerox PARC Artist-in-Residence Program, pages: 244-300, (Editors: Harris, C.), MIT-Press, 1999 (incollection)

Abstract
One of the effects of the PARC Artist In Residence (PAIR) program has been to expose the strong connections between scientists and artists. Both do what they do because they need to do it. They are often called upon to justify their work in order to be allowed to continue to do it. They need to justify it to funders, to sponsoring institutions, corporations, the government, the public. They publish papers, teach workshops, and write grants touting the educational or health benefits of what they do. All of these things are to some extent valid, but the fact of the matter is: artists and scientists do their work because they are driven to do it. They need to explore and create.

This chapter attempts to give a flavor of one multi-way "PAIRing" between performance artist PamelaZ and two PARC researchers, Michael Black and David Levy. The three of us paired up because we found each other interesting. We chose each other. While most artists in the program are paired with a single researcher Pamela jokingly calls herself a bigamist for choosing two PAIR "husbands" with different backgrounds and interests.

There are no "rules" to the PAIR program; no one told us what to do with our time. Despite this we all had a sense that we needed to produce something tangible during Pamela's year-long residency. In fact, Pamela kept extending her residency because she did not feel as though we had actually made anything concrete. The interesting thing was that all along we were having great conversations, some of which Pamela recorded. What we did not see at the time was that it was these conversations between artists and scientists that are at the heart of the PAIR program and that these conversations were changing the way we thought about our own work and the relationships between science and art.

To give these conversations their due, and to allow the reader into our PAIR interactions, we include two of our many conversations in this chapter.

[BibTex]

[BibTex]


Parameterized modeling and recognition of activities
Parameterized modeling and recognition of activities

Yacoob, Y., Black, M. J.

Computer Vision and Image Understanding, 73(2):232-247, 1999 (article)

Abstract
In this paper we consider a class of human activities—atomic activities—which can be represented as a set of measurements over a finite temporal window (e.g., the motion of human body parts during a walking cycle) and which has a relatively small space of variations in performance. A new approach for modeling and recognition of atomic activities that employs principal component analysis and analytical global transformations is proposed. The modeling of sets of exemplar instances of activities that are similar in duration and involve similar body part motions is achieved by parameterizing their representation using principal component analysis. The recognition of variants of modeled activities is achieved by searching the space of admissible parameterized transformations that these activities can undergo. This formulation iteratively refines the recognition of the class to which the observed activity belongs and the transformation parameters that relate it to the model in its class. We provide several experiments on recognition of articulated and deformable human motions from image motion parameters.

pdf pdf from publisher DOI [BibTex]

pdf pdf from publisher DOI [BibTex]


Explaining optical flow events with parameterized spatio-temporal models
Explaining optical flow events with parameterized spatio-temporal models

Black, M. J.

In IEEE Proc. Computer Vision and Pattern Recognition, CVPR’99, pages: 326-332, IEEE, Fort Collins, CO, 1999 (inproceedings)

pdf video [BibTex]

pdf video [BibTex]

1993


Mixture models for optical flow computation
Mixture models for optical flow computation

Jepson, A., Black, M.

In IEEE Conf. on Computer Vision and Pattern Recognition, CVPR-93, pages: 760-761, New York, NY, June 1993 (inproceedings)

Abstract
The computation of optical flow relies on merging information available over an image patch to form an estimate of 2-D image velocity at a point. This merging process raises many issues. These include the treatment of outliers in component velocity measurements and the modeling of multiple motions within a patch which arise from occlusion boundaries or transparency. A new approach for dealing with these issues is presented. It is based on the use of a probabilistic mixture model to explicitly represent multiple motions within a patch. A simple extension of the EM-algorithm is used to compute a maximum likelihood estimate for the various motion parameters. Preliminary experiments indicate that this approach is computationally efficient, and that it can provide robust estimates of the optical flow values in the presence of outliers and multiple motions.

pdf tech report [BibTex]

1993

pdf tech report [BibTex]


A framework for the robust estimation of optical flow
A framework for the robust estimation of optical flow

(Helmholtz Prize)

Black, M. J., Anandan, P.

In Fourth International Conf. on Computer Vision, ICCV-93, pages: 231-236, Berlin, Germany, May 1993 (inproceedings)

Abstract
Most approaches for estimating optical flow assume that, within a finite image region, only a single motion is present. This single motion assumption is violated in common situations involving transparency, depth discontinuities, independently moving objects, shadows, and specular reflections. To robustly estimate optical flow, the single motion assumption must be relaxed. This work describes a framework based on robust estimation that addresses violations of the brightness constancy and spatial smoothness assumptions caused by multiple motions. We show how the robust estimation framework can be applied to standard formulations of the optical flow problem thus reducing their sensitivity to violations of their underlying assumptions. The approach has been applied to three standard techniques for recovering optical flow: area-based regression, correlation, and regularization with motion discontinuities. This work focuses on the recovery of multiple parametric motion models within a region as well as the recovery of piecewise-smooth flow fields and provides examples with natural and synthetic image sequences.

pdf video abstract code [BibTex]

pdf video abstract code [BibTex]


Mixture models for optical flow computation
Mixture models for optical flow computation

Jepson, A., Black, M.

In Partitioning Data Sets, DIMACS Workshop, pages: 271-286, (Editors: Ingemar Cox, Pierre Hansen, and Bela Julesz), AMS Pub, Providence, RI., April 1993 (incollection)

pdf [BibTex]

pdf [BibTex]


Action, representation, and purpose: Re-evaluating the foundations of computational vision
Action, representation, and purpose: Re-evaluating the foundations of computational vision

Black, M. J., Aloimonos, Y., Brown, C. M., Horswill, I., Malik, J., G. Sandini, , Tarr, M. J.

In International Joint Conference on Artificial Intelligence, IJCAI-93, pages: 1661-1666, Chambery, France, 1993 (inproceedings)

pdf [BibTex]

pdf [BibTex]